Demonstration dataset of stoic.

Blah

neuron_diff

Format

A named list with the following elements:

main_data

n_obs*n_samples matrix to cluster

guide_data

n_obs*n_features matrix to guide clustering

sample_order

named vector to order samples

Source

Data generated by the FANTOM Consortium (Phase 6.2), at RIKEN, especially Chi Wai Yip. It monitors regulatory regions (enhancers, promoters) transcriptional activity during neuron differentiation. We also have the sequence features of these regions (k-mers composition) that we want to use to guide the co-expression clustering. This is only a data sample, as all data will be made available in the upcoming data release.

Examples

{
 print(head(neuron_diff$main_data[1:4]))
}
#> [1] 1.6008054 0.5201937 1.2598122 0.1303776